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Old 12-22-2010, 10:35 AM   #1
Location: il

Join Date: Jun 2010
Posts: 64
Default SNPs

After calling SNPs with gatk - I would like to add the following information for each SNP:

1. The number of reads that had "A", "G", ""C" and "T" in the SNP's position.

2. Add the info if the SNP is homozygous or heterozygous.

Anyone has an idea how to do that?
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