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Thread | Thread Starter | Forum | Replies | Last Post |
Plink: A/T and C/G SNPs | ElMichael | Bioinformatics | 0 | 01-31-2012 08:49 AM |
Annotation of SNPs | mgibson | Bioinformatics | 1 | 10-11-2011 01:28 PM |
too many SNPs using mpileup | Hit | Bioinformatics | 0 | 04-14-2011 02:39 PM |
Compare SNPs | bair | Bioinformatics | 5 | 01-27-2010 03:38 AM |
how to get snps | zslee | Bioinformatics | 2 | 01-09-2010 05:03 AM |
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#1 |
Member
Location: il Join Date: Jun 2010
Posts: 64
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After calling SNPs with gatk - I would like to add the following information for each SNP:
1. The number of reads that had "A", "G", ""C" and "T" in the SNP's position. 2. Add the info if the SNP is homozygous or heterozygous. Anyone has an idea how to do that? |
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