Hi,
I'm currently using the trinity package for RNAseq analysis. A little help here. If I wanted to run EdgeR with all the genes in my trinity assembly, is there a way to filter the DE results to remove genes with very low level expression. I know that I can use the output from filter_by_rsem, then just manually edit the DE results using excel, but I'm wondering if there is a script that will work directly on the DE results.
hope you could help.
thanks,
Christine
I'm currently using the trinity package for RNAseq analysis. A little help here. If I wanted to run EdgeR with all the genes in my trinity assembly, is there a way to filter the DE results to remove genes with very low level expression. I know that I can use the output from filter_by_rsem, then just manually edit the DE results using excel, but I'm wondering if there is a script that will work directly on the DE results.
hope you could help.
thanks,
Christine
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