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Old 06-09-2012, 11:41 PM   #1
Daniel Fernandez
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Location: Lima. Perú

Join Date: Nov 2011
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Default Annotation in GFF3

Hi,

Can anybody tell me a program to find genes by homology that generate GFF3?

I tired AAT but only show me a table
I tried Exonerate but it give me a GFF2 and it can't load in artemis
If anybody tell me MAKER, yes it is very very useful, I tried to install it but it's very complicate for me, I tried to install it for 2 months and nothing.
And I read that is not recommended convert GFF2 to GFF3.

Can anybody help me, please?

Thanks

DNL
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Old 06-11-2012, 01:45 AM   #2
sphil
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maybe here you can find a converter:
http://wiki.wormbase.org/index.php/C...g_GFF2_to_GFF3


Best,

phil
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Old 06-11-2012, 04:51 PM   #3
Daniel Fernandez
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Default

Quote:
Originally Posted by sphil View Post
maybe here you can find a converter:
http://wiki.wormbase.org/index.php/C...g_GFF2_to_GFF3


Best,

phil
Well thanks but I did not find the converter there, where is it?
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annotation, artemis, exonerate, gff, gff3

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