Hi,
I've a little problem with an alignment. I want to know to view the perfect alignment of a query to a database . Here's an example :
query
>query1
ATGC
subject :
>seq1
GATGC
>seq2
CGATGC
>seq3
ATGC
When I use Blast, the three alignment have the same e-value and score, but the best alignment for me is with seq3 ( same size )
is it a blast parameter to change ?
or an another program to use
Thanks,
Nicolas
I've a little problem with an alignment. I want to know to view the perfect alignment of a query to a database . Here's an example :
query
>query1
ATGC
subject :
>seq1
GATGC
>seq2
CGATGC
>seq3
ATGC
When I use Blast, the three alignment have the same e-value and score, but the best alignment for me is with seq3 ( same size )
is it a blast parameter to change ?
or an another program to use
Thanks,
Nicolas
Comment