Hi,
I have been using Prinseq to trim my Illumina data, and the fastq output looks like this:
Why is the header repeated twice? Mapping with bowtie seems to be fine, but when I try to collapse identical reads with fastx it will not take the format.
I have been using Prinseq to trim my Illumina data, and the fastq output looks like this:
Code:
@HWI-ST486:386:D1UMHACXX:3:1101:1399:2119 1:N:0:TGACCA TCGTATCTGTAATCATGAACTTGTCAACGGCTACCTGGTTTCTGTCCT +HWI-ST486:386:D1UMHACXX:3:1101:1399:2119 1:N:0:TGACCA 1:BDBEDFHHGHGCBGHGCHHIJGIFGGIGEHCHJJIJHGH<FDGDHF @HWI-ST486:386:D1UMHACXX:3:1101:1367:2139 1:N:0:TGACCA ATGTTTTTTGGGGTTATAACAGGGTGGAGCGCTTTATGCGACTTCGCCCTTT +HWI-ST486:386:D1UMHACXX:3:1101:1367:2139 1:N:0:TGACCA 1=DDDEDHHDHHJJIGIFDFGIIJHGI?GHJIFHI@GG@F@;AH=?=BDCEE
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