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Old 03-28-2011, 01:40 PM   #1
Location: baltimore

Join Date: Oct 2009
Posts: 89
Default Reference transcriptome - how to select


I have RNA-seq data set (single end ; 36mer).

I want to choose RefSeq or equivalent from other sources (ENSEMBL or UCSC).

If I am chose RefSeq (NCBI), the header information is not exactly compatible with UCSC annotations.

What is the general practice . I am analyzing RNA-Seq for the first time, I worked on Exome-Seq prior to this.

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