Go Back   SEQanswers > Bioinformatics > Bioinformatics

Similar Threads
Thread Thread Starter Forum Replies Last Post
post-doctoral position in NGS data analysis for cancer study alanqi Academic/Non-Profit Jobs 0 08-15-2011 07:32 PM
454 transcriptome analysis CHRYSES Bioinformatics 1 02-07-2011 04:56 AM
real world 454 sequencing data analysis examples?! glacierbird Bioinformatics 2 02-06-2010 05:25 AM
real world 454 sequencing data analysis examples?! glacierbird 454 Pyrosequencing 0 02-03-2010 12:31 PM
Starting the analysis of 454 data Naira 454 Pyrosequencing 1 08-17-2008 09:11 AM

Thread Tools
Old 09-11-2011, 10:30 PM   #1
Location: India

Join Date: Oct 2010
Posts: 59
Default Starting cancer transcriptome analysis of 454 sequencing data

Hi all,

We have a cancer related transcriptome data which is sequenced using 454 GS-FLX titanium, for which reference genome is available.

I want to set work pipeline for bioinformatics analysis, so I need help regarding from where to start, which software to use and best for 454 long read data as i am going to perform gene expression analysis. Linux operating is no issue for software, as i am working on both windows & linux. So far i have tried CLC genomics workbench and DNASTAR's QSeq.

Looking forward for useful inputs/suggestions.

ketan_bnf is offline   Reply With Quote
Old 09-11-2011, 11:35 PM   #2
Strand SI
The Avadis NGS Team
Location: All over the World

Join Date: Feb 2011
Posts: 26

You are welcome to try Avadis NGS for your analysis.

Disclaimer: we are the developers, but felt it was fair to suggest it in light of the other tools you said you tried.
Strand SI is offline   Reply With Quote

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 05:35 AM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO