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Old 07-31-2013, 02:41 AM   #1
anil KR
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Location: norway

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Default DESeq

Hi,

My name is Anil and i am new to DESeq analysis. By using DESeq script i produced MAplot and i extracted all the genes that are differentially regulated. I got around 295 genes.

Now i want to know which genes are up-regulated and down-regulated.

Can anyone help me how to find up-regulated and down-regulated genes.

Thanks in advance!

Anil.
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Old 07-31-2013, 05:03 AM   #2
dpryan
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The data frame output from whichever function you used for the statistical test (nbinomTest or nbinomGLMTest) has a log(fold change) column, the sign of which indicates direction of change.
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Old 07-31-2013, 05:55 AM   #3
anil KR
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Hi dpryan,

Thankyou for the reply! It's useful.


Anil.
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Old 08-02-2013, 06:38 PM   #4
bobsun
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GOOD! Thakns to you!
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