SEQanswers

Go Back   SEQanswers > Bioinformatics > Bioinformatics



Similar Threads
Thread Thread Starter Forum Replies Last Post
Identify adapter sequences in pacbio reads coldturkey Pacific Biosciences 15 06-23-2015 10:04 AM
Filtering PacBio reads ebioman Pacific Biosciences 30 04-20-2015 04:26 PM
Would PacBio RII reads be useful at 1X? jwag Pacific Biosciences 7 04-21-2014 06:11 AM
Find large indels from PacBio reads? metheuse Pacific Biosciences 1 07-01-2013 02:08 PM
Have a genome assembly, what should I do with 15x Pacbio reads? lemur2 Pacific Biosciences 2 10-25-2012 09:06 PM

Reply
 
Thread Tools
Old 09-08-2014, 01:43 AM   #1
amaurizio
Junior Member
 
Location: Italy

Join Date: Sep 2012
Posts: 4
Default BWA_MEM on PacBio Reads

Hello, can anybody explain me please how does the BWA-mem -x pacbio (Release 0.7.10, default settings ) algorithm work?

I found this interesting blog http://www.homolog.us/blogs/blog/201...-benchmarking/ but it is still not clear to me.

Can you also suggest me how to unambiguously distinguish mapped/unmapped and multimapping reads?

Thank you very much!!

Aurora
amaurizio is offline   Reply With Quote
Old 09-08-2014, 02:06 AM   #2
dpryan
Devon Ryan
 
Location: Freiburg, Germany

Join Date: Jul 2011
Posts: 3,480
Default

Please don't crosspost on here and biostars.
dpryan is offline   Reply With Quote
Reply

Tags
bwa_mem

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 08:37 PM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO