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Old 02-21-2013, 10:37 PM   #1
Jessica Liao
Junior Member
 
Location: Taiwan

Join Date: Jan 2013
Posts: 2
Default 1000genome NA12878 sequencing reads analysis

Dear all,

I want to analysis the sequencing reads of NA12878 from 1000genome
link:ftp://ftp.1000genomes.ebi.ac.uk/vol1...sequence_read/

There are a lot of sequencing reads in the folder.

I just want to know need I alignment all reads that file beginning with "ERR" or "SRR"(ex:ERR001268_1.filt.fastq.gz, ERR001268_2.filt.fastq.gz ERR001269_1.filt.fastq.gz .....many BIG data), or I can just chose some reads that generated at the same experiment to alignment?

The following link has the detailed instructions about reads, such is experiment accession, run accession ...etc.
link:http://www.ebi.ac.uk/ena/data/view/SRS000090

I want to know which sequencing reads are selected when I analysis whole genome sequence for one person.

Hoping someone can respond my question.

sincerely,
Jessica
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