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02-06-2012, 02:52 AM
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Member
Location: Sweden Join Date: Jan 2011
Posts: 12
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What are the default settings in bwa?
Hello,
If I understand correctly, the default setting of bwa aln - according to the homepage - is no seeding and max 4% mismatches over the whole read length. However, when I run bwa (bwa 0.5.9-r16) it reports that the default is 32 bp seed. What are the default settings for this version? Thank you in advance for resolving this confusing issue... |
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| Tags |
| bwa, bwa aln, bwa default settings, seed |
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