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Old 01-04-2011, 07:18 AM   #1
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Location: France

Join Date: Apr 2010
Posts: 1
Default soapaligner - settings -M/-v

Dear all,

I have problem to understand the settings "-v" and "-M" of soap.

Is somebody can help me to understand these options?

For example, what I don't understand:
1-Why do I get reads rwith missmatch using the setting "-v0"?
2-Why do I get only the reads with 1 missmatch using the setting "-M1"? I thought that I should get reads containing 0 or 1 missmatch...

Thank you in advance.
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