hi, we sequencd two strain, one WT 36bp single end , mutated 76 single end.
and i usd AMOS to assemble them with a reference genome and vevlet do novo. what i find is some special congtigs form vlevet can not be aligned to the contigs by AMOS, neither in reference genome. what should i do next? thanks for any help.
and i usd AMOS to assemble them with a reference genome and vevlet do novo. what i find is some special congtigs form vlevet can not be aligned to the contigs by AMOS, neither in reference genome. what should i do next? thanks for any help.
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