Me again,
So now, I've installed SMRT Portal on a better cluster, hoping to reduce time in computing. But during the installation process
it only detect two processors (??) on the machine. There are many more. I continue to the end and notice it only use one processor to run any analysis. Looking at the documentation, I modified the file
smrtanalysis/current/analysis/etcsmrtpipe.rc
and set a bigger number in
I set it to NPROC = 16/32; restart everything, though during the analysis still only using one processor. Please, any advise would be great. Thanks
So now, I've installed SMRT Portal on a better cluster, hoping to reduce time in computing. But during the installation process
Code:
bash smrtanalysis_2.3.0.140936.run -p smrtanalysis-patch_2.3.0.140936.p4.run --rootdir $SMRT_ROOT
smrtanalysis/current/analysis/etcsmrtpipe.rc
and set a bigger number in
Code:
# number of processors to use for parallel operations # NPROC = 1
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