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Old 07-21-2011, 02:07 AM   #1
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Location: Uppsala

Join Date: Jun 2011
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Default .afg to coverage plot

I have made an assembly with velvet while producing an amos .afg file. This file contains the information on the position of all the reads relative to the contigs right? So in principle I should be able to make a coverage plot (coverage per bp) using this. I have managed to make a bank directory with amos, but from there I am kind of stuck. Anyone know how to do this?
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