Go Back   SEQanswers > Bioinformatics > Bioinformatics

Similar Threads
Thread Thread Starter Forum Replies Last Post
more precision about VarScan somatic Jane M Bioinformatics 35 09-14-2017 02:59 PM
Questions about VarScan alexbmp Bioinformatics 7 02-20-2014 10:05 AM
VarScan output to VCF OlgaMikh Bioinformatics 4 06-07-2012 11:46 PM
Varscan and mpileup aunderwo Bioinformatics 2 11-05-2011 03:43 AM
error from VarScan shuang Bioinformatics 1 10-13-2011 07:35 AM

Thread Tools
Old 12-15-2011, 04:10 AM   #1
Location: UK

Join Date: Sep 2011
Posts: 12
Default varscan output


Does anyone use varscan?

I get this message "Not resetting normal file because chr10 < chr9". (repeated many times)

Any idea what it means or if its a problem?

jgSoton is offline   Reply With Quote
Old 12-20-2011, 08:39 AM   #2
Location: St. Louis

Join Date: Mar 2009
Posts: 62


This is just a warning printed by VarScan as it's simultaneously parsing normal and tumor files. As long as your output files contain all of the chromosomes that you expect, you can safely ignore it. If you encounter further problems, please shoot me an e-mail to dkoboldt (at) genome (dot) wustl (dot) edu.
dkoboldt is offline   Reply With Quote

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 06:56 AM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO