Go Back   SEQanswers > Literature Watch

Similar Threads
Thread Thread Starter Forum Replies Last Post
CNV Simulator -- Random Number Generation gprakhar Bioinformatics 5 05-11-2012 09:34 PM
PubMed: 'Next-generation' sequencing becomes 'now-generation'. Newsbot! Literature Watch 0 01-22-2012 02:23 AM
ART simulator for SNP detection benchmarking yhong Bioinformatics 0 09-23-2011 12:03 AM
PubMed: A novel and well-defined benchmarking method for second generation read mappi Newsbot! Literature Watch 0 09-20-2011 02:00 AM
PubMed: Brazilian genome sequencing projects: state of the art. Newsbot! Literature Watch 0 12-17-2008 05:03 AM

Thread Tools
Old 12-27-2011, 02:00 AM   #1
RSS Posting Maniac

Join Date: Feb 2008
Posts: 1,443
Default PubMed: ART: a next-generation sequencing read simulator.

Syndicated from PubMed RSS Feeds

ART: a next-generation sequencing read simulator.

Bioinformatics. 2011 Dec 23;

Authors: Huang W, Li L, Myers JR, Marth GT

SUMMARY: ART is a set of simulation tools that generate synthetic next-generation sequencing reads. This functionality is essential for testing and benchmarking tools for next-generation sequencing data analysis including read alignment, de novo assembly, and genetic variation discovery. ART generates simulated sequencing reads by emulating the sequencing process with built-in, technology-specific read error models and base quality value profiles parameterized empirically in large sequencing datasets. We currently support all three major commercial next-generation sequencing platforms: Roche's 454, Illumina's Solexa, and Applied Biosystems' SOLiD.ART also allows the flexibility to use customized read error model parameters and quality profiles. AVAILABILITY: Both source and binary software packages are available at CONTACT: WH at or GTM at

PMID: 22199392 [PubMed - as supplied by publisher]

Newsbot! is offline   Reply With Quote

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 06:31 AM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO