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Old 04-02-2013, 01:07 PM   #1
deepbiomed
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Location: Danbury, CT

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Post SRA-Toolkit 2.3.1 fastq-dump multiplefiles at once Windows command line

Hi Guyz,

I am not software professional so bare with me if I am asking some silly questions.

I have downloaded SRP003329 study, which contains 20 sub-directory with .sra files. Now I am able to convert all these files individually into fastq format using fastq-dump command.
.../bin/fastq-dump -A [ ] -O []
but I want to know how I can do the same for all the .sra files in my dir SRP003329 at once. something like find all .sra files in my directory and fastq-dump all at once.

Thanks
Deep
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