Reads color in IGV

seqance · 07-19-2018, 10:50 AM

Hi everyone,
What's the difference between red, blue and grey reads in IGV?
Many thanks

GenoMax · 07-19-2018, 11:02 AM

Help page that describes the meaning of those colors.

seqance · 07-19-2018, 11:08 AM

Thank you GenoMAx

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
What does IGV track color alignments by strand when using non-stranded RNA-seq?	Villy	Bioinformatics	3	03-19-2015 11:49 PM
How to change track color by using batch script of IGV	silasysh	Bioinformatics	0	08-29-2014 01:05 AM
bwa:how to align color space reads	SOLiDance	Bioinformatics	13	01-08-2013 05:27 AM
BWA unmapped reads for color space data	jsellers18	Bioinformatics	4	09-14-2012 01:58 PM
sequence error detection in color space reads	holywoool	SOLiD	0	10-11-2010 12:34 AM

07-19-2018, 10:50 AM	#1
seqance Junior Member Location: france Join Date: May 2018 Posts: 8	Reads color in IGV Hi everyone, What's the difference between red, blue and grey reads in IGV? Many thanks

07-19-2018, 11:02 AM	#2
GenoMax Senior Member Location: East Coast USA Join Date: Feb 2008 Posts: 7,143	Help page that describes the meaning of those colors.

07-19-2018, 11:08 AM	#3
seqance Junior Member Location: france Join Date: May 2018 Posts: 8	Thank you GenoMAx