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Old 03-21-2011, 03:40 AM   #1
ryuky
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Location: china

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Default how to use SOAPdenovo to handle the Solid data.

Hi everyone,
I'm curious about that whether the Solid data could be converted into fastq format just like solexa so that it can be handled by SOAPdenovo.
Would you please offer me a full framwork using SOAPdenovo to handle the Solid data include how to convert the format and so on.
thanks!
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Old 03-23-2011, 12:45 AM   #2
schmima
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Quote:
Would you please offer me a full framwork using SOAPdenovo to handle the Solid data include how to convert the format and so on.
you ask for quite a lot...

Haven't used SOAPdenovo (and I havent read the manual). However - for velvet&oases on SOLiD I posted a small "guide" (you can also use velvet without oases):

http://seqanswers.com/forums/showthread.php?t=3877

No idea if it will be helpful for SOAP - but it will work with velvet.
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