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Old 05-21-2010, 05:20 PM   #1
michael_0214
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Question A Problem with Shory

Have everyone installed the assembly software for SOLID data-Shorty on Ubuntu? A error occurs:"configuration file needed" in this step-./build conf/conf-file bin/shorty-assembler, can anyone give me a hand?
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Old 03-15-2011, 12:29 AM   #2
Jenzo
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Quote:
Originally Posted by michael_0214 View Post
Have everyone installed the assembly software for SOLID data-Shorty on Ubuntu? A error occurs:"configuration file needed" in this step-./build conf/conf-file bin/shorty-assembler, can anyone give me a hand?
Yes, I'm trying it.. as conf-file you have to choose from these three options:
'ab-strict' : Used for ABI Solid Data (it would be conf/ab-strict)
'helicos-strict' : Used for Helicos data (it would be conf/helicos-strict)
'solexa-strict' : Used for Illumina/Solexa data (it would be conf/solexa-strict)

When executing the build command, g++ does severeal things but stops with an error:
g++: ../obj/shorty_string.o : No such file or directory
All other needed *.o-files are generated automatically, except shorty_string.o
Does anyone know how to solve this problem? I already tried to copy another shorty-string.o from the ../src directory into ../obj but then there are a lot of undefined references..

Last edited by Jenzo; 03-15-2011 at 11:46 PM.
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Old 03-17-2011, 12:18 AM   #3
Jenzo
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Quote:
Originally Posted by Jenzo View Post
When executing the build command, g++ does severeal things but stops with an error:
g++: ../obj/shorty_string.o : No such file or directory
All other needed *.o-files are generated automatically, except shorty_string.o
Does anyone know how to solve this problem? I already tried to copy another shorty-string.o from the ../src directory into ../obj but then there are a lot of undefined references..
Solved: Before building we deleted ../src/shorty-string.o - after that everything was fine. Works also on 64-bit architecture.
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