Hello,
I use GATK v1.2-4-gd9ea764 and when i use this command :
java -Xmx4G -jar GenomeAnalysisTK/GenomeAnalysisTK.jar -l INFO -R chr7.fa -I seq.bam --DBSNP snp132.txt -T CountCovariates -cov ReadGroupConvariate -cov QualityScoreCovariate -cov CycleCovariate -cov DinucCovariate -recalFile seq.recal_data.csv
I have this message :
MESSAGE: Argument with name 'DBSNP' isn't defined.
Then I use different argument but none work. Have you an idea ?
Thank
I use GATK v1.2-4-gd9ea764 and when i use this command :
java -Xmx4G -jar GenomeAnalysisTK/GenomeAnalysisTK.jar -l INFO -R chr7.fa -I seq.bam --DBSNP snp132.txt -T CountCovariates -cov ReadGroupConvariate -cov QualityScoreCovariate -cov CycleCovariate -cov DinucCovariate -recalFile seq.recal_data.csv
I have this message :
MESSAGE: Argument with name 'DBSNP' isn't defined.
Then I use different argument but none work. Have you an idea ?
Thank
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