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Old 02-15-2013, 12:35 PM   #1
imang
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Location: Toronto

Join Date: Aug 2012
Posts: 4
Question maq simulator reads orientation

Hi guys,

I am simulating paried-end reads with MAQ simulator. Does anybody know if it keeps inward orientation for paired-reads or all reads are sorted out in one direction somehow?

Actually what is the usual case for paried-end short read simulators?

Thanks,
Iman
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