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Old 07-03-2013, 09:51 PM   #1
NGS_New_User
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Exclamation Genome comparison

Hi wise people.
I have assembled two genomes of a non-model organism via de novo assembly, a male and female assembly. I want to compare the male and female genome to check out what differences and/or similarities are present, and or any unique reads.
My question is, what tools/software can I use to achieve this goal (have a comparison)?
I am quite desperate and will appreciate any suggestions, ideas and comments.
Thank you!!
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Old 07-04-2013, 06:27 AM   #2
gsgs
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http://magictour.free.fr/seq/epifox[remove if really trusted].exe

Last edited by ECO; 07-09-2013 at 03:16 PM. Reason: Making suspicious URL perhaps less suspicious
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Old 07-06-2013, 10:41 AM   #3
NGS_New_User
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Default help...

Quote:
Originally Posted by NGS_New_User View Post
Hi wise people.
I have assembled two genomes of a non-model organism via de novo assembly, a male and female assembly. I want to compare the male and female genome to check out what differences and/or similarities are present, and or any unique reads.
My question is, what tools/software can I use to achieve this goal (have a comparison)?
I am quite desperate and will appreciate any suggestions, ideas and comments.
Thank you!!
Hi again, I am guessing there might not be a specific bioinformatics tool that can accomplish the goal of comparing two genomes. So, re-phrasing my question, what could be a possible pipeline that could lead to finding differences/similarities between two assembled genomes of different sexes? Thanks
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