Go Back   SEQanswers > Bioinformatics > Bioinformatics

Similar Threads
Thread Thread Starter Forum Replies Last Post
--min-var-freq Varscan2mplieup Joanna_trinh Genomic Resequencing 0 04-26-2015 06:48 AM
Quickly find interested gene SDPA_Pet Bioinformatics 2 02-05-2015 12:10 AM
Software to quickly calculate GC content? JueFish Bioinformatics 13 09-26-2014 05:13 AM
Ideas how to annotate vcf with local variant freq info? swNGS Bioinformatics 5 05-20-2013 08:33 AM

Thread Tools
Old 08-13-2020, 06:42 AM   #1
Junior Member
Location: RTP

Join Date: Jun 2012
Posts: 7
Default Get Allele freq quickly from Gnomad

I would like to know the AF of ~4000 rsIDs (dbSNP) quickly in Gnomad GRCh37 database. I looked at the instructions for getting this from Gnomad and it seems I would need to download the entire data. Is there is a faster and less involved way fo getting the AF from Gnomad without downloading more than 50GB of data? Any script or API or another way to crawl Gnomad database?
floydian_slip is offline   Reply With Quote


Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 11:17 AM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO