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Old 06-07-2010, 08:47 AM   #1
ptong7
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Default help, the SOAPsnp input files format

Hi all,
Is anyone familiarity with SOAPsnp input files?

My alignment file is sam file. I want to use SOAPsnp call SNP.
Is anybody know how to convert the sam file to the SOAPsnp input files?

Thanks a lot!!!
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Old 06-08-2010, 11:05 AM   #2
jgibbons1
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SOAPsnp uses SOAPaligner output as its input. You may want to re-map your reads with SOAPaligner.
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