Go Back   SEQanswers > Bioinformatics > Bioinformatics

Similar Threads
Thread Thread Starter Forum Replies Last Post
Pindel stuck? casshyr Bioinformatics 3 06-13-2014 07:59 AM
Cufflinks get stuck at a locus Mayflower Bioinformatics 1 01-06-2014 03:52 AM
cufflinks stuck at a locus? caballien RNA Sequencing 2 02-17-2013 12:32 AM
Tophat 2.0.0 is stuck EGrassi Bioinformatics 8 10-24-2012 03:08 AM
3730XL stuck on yellow? pmiguel Sanger/Dye Terminator 0 12-21-2011 12:20 PM

Thread Tools
Old 01-08-2016, 05:12 PM   #1
Junior Member
Location: India

Join Date: Oct 2015
Posts: 1
Default Cuffdiff Stuck

I am running Cuffdiff to compare two groups of human transcriptomes, one group with five replicates and second with seven. I merged gtf file output from Cufflinks with Cuffmerge. I am using this merged file and bam files from Tophat output for Cuffdiff. Cuffdiff seemed to be running alright for four days but for last 24 hours it is stuck at one locus. It says
"Processing Locus NW_014040931.1:81020-136334 [************************ ]

There is no error message. How can I solve this problem? I using Cufflinks 2.2.1 and running it on machine with 8 processors and 32 Gb memory.
Many Thanks.
yashoda is offline   Reply With Quote

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 11:38 PM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO