I ran Bowtie to align my RNA-seq of 18 samples, 3 per group, single end read sequencing. Some of LogFc values that I got from CuffDiff assigned to inf or -inf. What does that mean? Can I replace the -inf with -5 and the inf with 5 to run pathway analysis. (I substitute every positive LogFc with 5 and the negative LogFc with -5).
Any help would be appreciated
Any help would be appreciated
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