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Old 10-15-2008, 11:53 AM   #1
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Default SNP calling on 454 data

Anyone has ideas on how to make variation calls on 454 re-sequencing data?

perhaps using the Alldiffs or HCDiffs files from gsmapper software? or some other tools. I believe there needs to be some downstream analysis after Marth lab's mosaik tool, in order to get variation positions and % calls for A C G Ts
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