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  • #1

    TopHat Warning: Encountered reference sequence with only gaps

    Hi,

    I received the following warning during a tophat run earlier today.
    Code:
    [Tue Jul 19 11:55:37 2011] Indexing splices
Warning: Encountered reference sequence with only gaps
Warning: Encountered reference sequence with only gaps
Warning: Encountered reference sequence with only gaps
Warning: Encountered reference sequence with only gaps
    Can anyone explain to me what that might mean?

    Thanks,
    Sam
    Tags: None
  • #2
    Did you find the answer to your question? I am facing the same problem with my Data as well.

    Comment

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