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Old 01-24-2010, 09:06 PM   #1
Location: Australia

Join Date: Jun 2009
Posts: 34
Question Alternative splicing detection using RNA-seq

I used Bowtie and Tophat to align my reads and to identify splice junctions but now i would like to be able to compare my two conditions.

I am looking for something that uses mRNA-seq to identify novel splicing events in a given sample or, if multiple samples are available, identifies differential splicing events between those samples.

Has anyone come across some software that can do these things?

Thanks in advance.
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