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  • cummeRbund help!

    I'm a new guy to bioinformatics.
    i used tophat and cufflinks for my RNA-seq data to generate diff_out file.Until this step everything is fine.
    then i started cummeRbund with my diff_out file, but always failed.

    here is my command:
    $ R
    > library(cummeRbund)
    > cuff_data <- readCufflinks('diff_out')
    here is the problem:

    Creating database diff_out/cuffData.db
    Reading diff_out/genes.fpkm_tracking
    Checking samples table...
    Populating samples table...
    Writing genes table
    Reshaping geneData table
    Recasting
    Writing geneData table
    Error in sqliteExecStatement(con, statement, bind.data) :
    RS-DBI driver: (unable to bind data for parameter ':status')

    Highly appreciate your help.

  • #2
    The creator of cummeRbund (lgoff) has commented on identical problem here.

    Comment

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