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Old 08-26-2012, 08:05 PM   #1
tmacme
Junior Member
 
Location: China

Join Date: Oct 2011
Posts: 3
Angry summarize_annovar.pl error message

Any one knew how to deal with this problem ?
Thanks!
$ perl summarize_annovar.pl -buildver hg19 653_snps.avinput -outfile 653_snps ./humandb
NOTICE: the --ver1000g argument is set as '1000g2010nov' by default

NOTICE: Running step 1 with system command <annotate_variation.pl -geneanno -buildver hg19 -dbtype refgene -outfile 653_snps -exonsort 653_snps.avinput ./humandb>

Error running system command: <annotate_variation.pl -geneanno -buildver hg19 -dbtype refgene -outfile 653_snps -exonsort 653_snps.avinput ./humandb>
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