Several short-read aligners claim that they can perform gapped alignment - I'm new to short-read aligners, and I don't understand what 'gapped alignment' means. How is it different from standard alignment?
Thanks.
Thanks.
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read: ATGAT----ATGA ref: ATGATGATGATGA
read: ATGAG-A ref: ATGAGGA read: ATGAGA ref: ATGAGG
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