I have the variant information in form of the chromosomal position and allele change. I wish to translate it into the relevant amino acid change (if it is a nonsysn change). I do know how to do it but it seems like there must be something out there. Don't want to reinvent the wheel. Any suggestionss
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Originally posted by akitrav View PostI have the variant information in form of the chromosomal position and allele change. I wish to translate it into the relevant amino acid change (if it is a nonsysn change). I do know how to do it but it seems like there must be something out there. Don't want to reinvent the wheel. Any suggestionss
If you wanted to do a bit more yourself, you could used blastx to compare your DNA sequences to all potential proteins in the organism, and parse the blast output.
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