I have a list of nucleotide sequences (genes) and I would like to Blast against a list of nucleotide sequences from other species to check potential homologous sequences (orthologs and paralogs).
Which blast is best for it? Blastn or Megablast?
My smallest sequence has 12 nucleotides, and the largest has 16,000.
Thanks
Which blast is best for it? Blastn or Megablast?
My smallest sequence has 12 nucleotides, and the largest has 16,000.
Thanks
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