Hi all,
Tophat is a great, but it seems not working so well with Cufflinks. As Cufflinks require the .SAM result containing the "XS:A:±" field and Tophat don't provide this, I will have to add this field to the end of each line of .sam file.
But after I did this, cufflinks warned me with "XA attribute not supported". And "XA" attribute is there from Tophat. Should I remove "XA" field or put "XS" field in the position of "XA"?
Thanks!
Tophat is a great, but it seems not working so well with Cufflinks. As Cufflinks require the .SAM result containing the "XS:A:±" field and Tophat don't provide this, I will have to add this field to the end of each line of .sam file.
But after I did this, cufflinks warned me with "XA attribute not supported". And "XA" attribute is there from Tophat. Should I remove "XA" field or put "XS" field in the position of "XA"?
Thanks!
Comment