Go Back   SEQanswers > Applications Forums > RNA Sequencing

Similar Threads
Thread Thread Starter Forum Replies Last Post
CummeRbund questions glados Bioinformatics 15 07-10-2017 02:13 AM
Problem with cummeRbund and RSQLite noplacetoh1de Bioinformatics 9 11-03-2014 01:33 PM
cummeRbund get isoforms paolo.kunder Bioinformatics 6 04-23-2014 07:59 AM
cummeRbund installation m_elena_bioinfo Bioinformatics 3 08-02-2012 01:42 AM
getSig function in cummerBund shurjo Bioinformatics 3 04-25-2012 11:57 AM

Thread Tools
Old 02-24-2015, 02:34 PM   #61
Junior Member
Location: Canada

Join Date: Jul 2014
Posts: 4
Default heatmap scale

Hi guys,

I am trying to get a heatmap for all my differentially expressed genes (500 total). However I am experiencing difficulties with this. I tried to manually input all gene codes to R, use the function getGenes and then find the heatmap, but I was hopeless. The problem is with the scale of the heat map. I don't know how to modify the scale and it gives me 3 ranges (from 0 to 0.3, 0.3 to 2 and 2 to anything above that). Most of my genes have FPKM values higher than 2, so my heatmap has only one color all across the map

Any idea on how to change the scale of my heatmap?
pepe84 is offline   Reply With Quote
Old 02-25-2015, 04:01 AM   #62
my other car is a limozeen
Location: New Haven, CT, USA

Join Date: Feb 2012
Posts: 23

please disregard
SrCardgage is offline   Reply With Quote


Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 04:38 PM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2019, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO