quality problem when mapping with gMap

[lixiangru]

Hi,all!
Does gmap account for the sequencing quality when mapping?
It seems that no argument is for the quality file when the cDNA file is in fasta format. So I wonder whether gmap account for the base quality when do mapping.

[lixiangru]

Hi,all!
Does gmap account for the sequencing quality when mapping?
It seems that no argument is for the quality file when the cDNA file is in fasta format. So I wonder whether gmap account for the base quality when do mapping.

I guess quality information is not used at all by gMap when do mapping after i finished such related manuals.