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  • DEXSeq - condition / group level average

    I am using DEXSeq to find deferentially expressed exons. But I wonder except for the statistics, is it possible to calculate the average/mean of the exon expressions in each condition/groups? If true, how?

    Thanks!

  • #2
    Hi @miaom,

    Yes, it is possible! Have a look at the estimatelog2FoldChanges function. It has options to extract the coefficients from the glm corresponding to the exon usage coefficients.

    Alejandro

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