HGAP assembly through Amazon (smrt analyses)

tony_mane · 09-24-2017, 06:11 PM

Greetings, about 3 years ago I was able to use Amazon's AWS computing resources to run the HGAP assembler on the genomes of some Archaeal populations. I was interested in using this resource again, however, when i search for "smrt" through the public AMIs on the AWS page, I am unable to find anything from PacBio. If anyone knows what the ID is for the smrt analysis AMI, and could share it, I would appreciate it.

Thanks!

-Tony

GenoMax · 09-25-2017, 03:24 AM

SMRTanalysis package has been superceeded by SMRT Link. Someone from PacBio may have information on whether an Amazon AMI is available.

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09-24-2017, 06:11 PM	#1
tony_mane Junior Member Location: Atlanta Join Date: Sep 2017 Posts: 1	HGAP assembly through Amazon (smrt analyses) Greetings, about 3 years ago I was able to use Amazon's AWS computing resources to run the HGAP assembler on the genomes of some Archaeal populations. I was interested in using this resource again, however, when i search for "smrt" through the public AMIs on the AWS page, I am unable to find anything from PacBio. If anyone knows what the ID is for the smrt analysis AMI, and could share it, I would appreciate it. Thanks! -Tony

09-25-2017, 03:24 AM	#2
GenoMax Senior Member Location: East Coast USA Join Date: Feb 2008 Posts: 6,795	SMRTanalysis package has been superceeded by SMRT Link. Someone from PacBio may have information on whether an Amazon AMI is available.