If a read has a zero quality score in MAQ does that mean:
a) The read aligns to multiple positions
b) The read aligns to nowhere
I think it's either one or both of these but I'd hope someone can clear it up for me?
a) The read aligns to multiple positions
b) The read aligns to nowhere
I think it's either one or both of these but I'd hope someone can clear it up for me?