./stampy.py --bwaoptions="-q10 /data/bwa/bwa_human" -g hg_rna -h hg_rna -M /data/3_1.fq /data/3_2.fq
stampy: Mapping...
stampy: [bwa_aln] 17bp reads: max_diff = 2
stampy: [bwa_aln] 38bp reads: max_diff = 3
stampy: [bwa_aln] 64bp reads: max_diff = 4
stampy: [bwa_aln] 93bp reads: max_diff = 5
stampy: [bwa_aln] 124bp reads: max_diff = 6
stampy: [bwa_aln] 157bp reads: max_diff = 7
stampy: [bwa_aln] 190bp reads: max_diff = 8
stampy: [bwa_aln] 225bp reads: max_diff = 9
stampy: [bwt_restore_bwt] fail to open file '/data/bwa/bwa_human.rbwt'. Abort!
stampy: Error: Executing 'bwa aln -q10 /data/bwa/bwa_human /tmp/tmpbwaoA8298.fq' exits with returncode -6
stampy: Mapping...
stampy: [bwa_aln] 17bp reads: max_diff = 2
stampy: [bwa_aln] 38bp reads: max_diff = 3
stampy: [bwa_aln] 64bp reads: max_diff = 4
stampy: [bwa_aln] 93bp reads: max_diff = 5
stampy: [bwa_aln] 124bp reads: max_diff = 6
stampy: [bwa_aln] 157bp reads: max_diff = 7
stampy: [bwa_aln] 190bp reads: max_diff = 8
stampy: [bwa_aln] 225bp reads: max_diff = 9
stampy: [bwt_restore_bwt] fail to open file '/data/bwa/bwa_human.rbwt'. Abort!
stampy: Error: Executing 'bwa aln -q10 /data/bwa/bwa_human /tmp/tmpbwaoA8298.fq' exits with returncode -6
Comment