Hi everyone,
Have a question regarding workflow in ANNOVAR. I would like to have the genelist that auto_annovar generates be annotated with the information that is output with the summarize to CSV script. It's nice to have a list of candidate genes that annovar picks out in a gene list, but then it seems cumbersome to have to go back to the summary csv and inspect each SNP for quality, polyphen, etc.
So my question: is there anyway to have the final genelist generated by ANNOVAR annotated?
Thanks so much for any help!!
-Chris
Have a question regarding workflow in ANNOVAR. I would like to have the genelist that auto_annovar generates be annotated with the information that is output with the summarize to CSV script. It's nice to have a list of candidate genes that annovar picks out in a gene list, but then it seems cumbersome to have to go back to the summary csv and inspect each SNP for quality, polyphen, etc.
So my question: is there anyway to have the final genelist generated by ANNOVAR annotated?
Thanks so much for any help!!
-Chris
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