Error during Bfast match step

James W. MacDonald · 01-05-2011, 06:19 AM

I get the following error when running the match step of bfast:

Searching index file 10/10 (index #10, bin #1)...
Reading index from /u1/reference/bfast/gatk/Homo_sapiens_assembly18_norandom.fasta.cs.10.1.bif.
Read index from /u1/reference/bfast/gatk/Homo_sapiens_assembly18_norandom.fasta.cs.10.1.bif.
Reads processed: 70250000************************************************************
In function "RGMatchPrint": Fatal Error[WriteFileError]. Message: Could not write m->readLength, m->qualLength, m->read, m->qual, m->maxReached, and m->numEntries.
The file stream error was:: Input/output error
***** Exiting due to errors *****

Any suggestions?

Jim

drio · 01-05-2011, 07:12 AM

Do you have any space left in the volumen where BF is dumping the data?

James W. MacDonald · 01-05-2011, 07:15 AM

That was my first thought. And yes, I do. I am actually running other instances of bfast match right now, without problems. It's just this SOLiD run that is giving me problems.

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01-05-2011, 07:12 AM	#2
drio Senior Member Location: 41°17'49"N / 2°4'42"E Join Date: Oct 2008 Posts: 323	Do you have any space left in the volumen where BF is dumping the data? __________________ -drd

01-05-2011, 06:19 AM	#1
James W. MacDonald Junior Member Location: Ann Arbor Join Date: Nov 2008 Posts: 5	Error during Bfast match step I get the following error when running the match step of bfast: Searching index file 10/10 (index #10, bin #1)... Reading index from /u1/reference/bfast/gatk/Homo_sapiens_assembly18_norandom.fasta.cs.10.1.bif. Read index from /u1/reference/bfast/gatk/Homo_sapiens_assembly18_norandom.fasta.cs.10.1.bif. Reads processed: 70250000********************************************************** In function "RGMatchPrint": Fatal Error[WriteFileError]. Message: Could not write m->readLength, m->qualLength, m->read, m->qual, m->maxReached, and m->numEntries. The file stream error was:: Input/output error * Exiting due to errors *** Any suggestions? Jim

01-05-2011, 07:15 AM	#3
James W. MacDonald Junior Member Location: Ann Arbor Join Date: Nov 2008 Posts: 5	That was my first thought. And yes, I do. I am actually running other instances of bfast match right now, without problems. It's just this SOLiD run that is giving me problems.