SEQanswers

Go Back   SEQanswers > Sequencing Technologies/Companies > Illumina/Solexa

Similar Threads
Thread Thread Starter Forum Replies Last Post
Illumina Pipeline Version t.wieland Bioinformatics 8 06-09-2011 03:03 AM
Bowtie to Illumina Pipeline Conversion GERALD Bioinformatics 0 06-27-2010 11:07 AM
Illumina pipeline multicoring joa_ds Bioinformatics 6 03-30-2009 12:42 PM
Help installing Illumina pipeline 1.0 koakeson Bioinformatics 1 12-03-2008 09:39 AM
Pipeline Illumina question bioinfogirl Bioinformatics 4 11-24-2008 05:00 AM

Reply
 
Thread Tools
Old 01-11-2011, 06:58 AM   #1
hdd102
Junior Member
 
Location: Beltsvile, MD

Join Date: Jan 2011
Posts: 1
Default Illumina Pipeline on Macintosh

Hello,

This is my first post on the site. We have recently entered the deep sequencing field and are interested to learn if there is anyway to implement an Illumina pipeline on a Macintosh starting with the Sequencing Control Software output either through Unix via X11 or an actual Macintosh native program. We currently use CLC Genomics Workbench and JMP Genomics 5 for analysis on the backend.

Best,

Harry Dawson
hdd102 is offline   Reply With Quote
Old 01-12-2011, 04:59 AM   #2
drio
Senior Member
 
Location: 4117'49"N / 24'42"E

Join Date: Oct 2008
Posts: 323
Default

The Illumina pipeline is mainly C++ (heavily relying on the boost lib), perl, python and GNUMake. Using macports you should be able to make it run.

Also, if you want to go the easy way (at the cost of performance) you could install linux in a VM and then run the pipeline there.
__________________
-drd
drio is offline   Reply With Quote
Reply

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 09:50 AM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2021, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO