|
|
|
|
|||||||
Similar Threads
|
||||
| Thread | Thread Starter | Forum | Replies | Last Post |
| Illumina Pipeline Version | t.wieland | Bioinformatics | 8 | 06-09-2011 03:03 AM |
| Bowtie to Illumina Pipeline Conversion | GERALD | Bioinformatics | 0 | 06-27-2010 11:07 AM |
| Illumina pipeline multicoring | joa_ds | Bioinformatics | 6 | 03-30-2009 12:42 PM |
| Help installing Illumina pipeline 1.0 | koakeson | Bioinformatics | 1 | 12-03-2008 09:39 AM |
| Pipeline Illumina question | bioinfogirl | Bioinformatics | 4 | 11-24-2008 05:00 AM |
 |
|
|
Thread Tools |
01-11-2011, 06:58 AM
|
#1 |
|
Junior Member
Location: Beltsvile, MD Join Date: Jan 2011
Posts: 1
|
Illumina Pipeline on Macintosh
Hello,
This is my first post on the site. We have recently entered the deep sequencing field and are interested to learn if there is anyway to implement an Illumina pipeline on a Macintosh starting with the Sequencing Control Software output either through Unix via X11 or an actual Macintosh native program. We currently use CLC Genomics Workbench and JMP Genomics 5 for analysis on the backend. Best, Harry Dawson |
|
|
|
01-12-2011, 04:59 AM
|
#2 |
|
Senior Member
Location: 41°17'49"N / 2°4'42"E Join Date: Oct 2008
Posts: 323
|
The Illumina pipeline is mainly C++ (heavily relying on the boost lib), perl, python and GNUMake. Using macports you should be able to make it run.
Also, if you want to go the easy way (at the cost of performance) you could install linux in a VM and then run the pipeline there.
__________________
-drd |
|
|
|
|
| Thread Tools | |
|
|
