Warning message- BFAST

CS Student · 05-21-2011, 12:40 PM

Dear all,

I am getting the below warning message when trying to run the BFAST program. I would appreciate any help explaining for me the reason for getting this message?

Thanks.
=====================

Reading in reference genome from phi.x.174.fa.nt.brg.
In total read 1 contigs for a total of 5386 bases
************************************************************
Creating the index...
************************************************************
Warning: startContig was less than zero.
Defaulting to contig=1 and position=1.
************************************************************
************************************************************
Warning: endContig was greater than the number of contigs in the reference genome.
Defaulting to reference genome's end contig=1 and position=5386.
************************************************************

nilshomer · 05-23-2011, 08:17 AM

The default is to auto-detect the range you wish to index etc. You can safely ignore these warnings if you were not trying to manually set the region of interest.

CS Student · 05-26-2011, 11:56 AM

Thanks for your reply.

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05-21-2011, 12:40 PM	#1
CS Student Member Location: US Join Date: Apr 2011 Posts: 20	Warning message- BFAST Dear all, I am getting the below warning message when trying to run the BFAST program. I would appreciate any help explaining for me the reason for getting this message? Thanks. ===================== Reading in reference genome from phi.x.174.fa.nt.brg. In total read 1 contigs for a total of 5386 bases ********************************************************** Creating the index... ******************************************************** Warning: startContig was less than zero. Defaulting to contig=1 and position=1. ******************************************************** ******************************************************** Warning: endContig was greater than the number of contigs in the reference genome. Defaulting to reference genome's end contig=1 and position=5386. **********************************************************

05-23-2011, 08:17 AM	#2
nilshomer Nils Homer Location: Boston, MA, USA Join Date: Nov 2008 Posts: 1,285	The default is to auto-detect the range you wish to index etc. You can safely ignore these warnings if you were not trying to manually set the region of interest.

05-26-2011, 11:56 AM	#3
CS Student Member Location: US Join Date: Apr 2011 Posts: 20	Thanks for your reply.