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12-10-2012, 12:23 PM
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#1 |
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Member
Location: Montreal Join Date: Dec 2012
Posts: 10
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How to index a genome for BLAST
Hi everyone!
I have just installed BLAST+ 2.2.27 on my mac. I want to run some cDNAs against arabidopsis thaliana's genome. I know I need to download the genome and format it for BLAST searches but I don't know how. I would greatly appreciate any help. Thank you very much for your time! |
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12-10-2012, 01:25 PM
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#2 |
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Member
Location: San Francisco Bay Area Join Date: Dec 2008
Posts: 35
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makeblastdb -in <genome.fasta> -dbtype nucl
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12-10-2012, 01:49 PM
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#3 |
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Member
Location: Montreal Join Date: Dec 2012
Posts: 10
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Thank you!
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