![]() |
|
![]() |
||||
Thread | Thread Starter | Forum | Replies | Last Post |
Bioinformatics cores in a world of cloud computing and genome factories | turnersd | Core Facilities | 4 | 02-29-2012 08:41 AM |
Tophat help: how to maximize CPU performance | lewewoo | Bioinformatics | 3 | 10-19-2011 06:09 PM |
Advice for setting up a cpu cluster | Kennels | General | 4 | 10-14-2011 01:43 AM |
newbler cpu core usage | malatorr | 454 Pyrosequencing | 2 | 01-12-2010 05:59 AM |
Terminal Transferase Reaction | NextGenSeq | SOLiD | 3 | 07-30-2009 02:00 PM |
![]() |
|
Thread Tools |
![]() |
#1 |
Member
Location: St. Louis, MO Join Date: Jun 2010
Posts: 29
|
![]()
Hi, all,
When running perl scripts on our Mac (our super computer with 16 CPU cores and 32 GB RAM), I found only one core is in process (100%). Other 15 cores are less than 5%. I feel the speed is quite slow when I try to analyze large datasets. But when I run the CLC workbench, all cores are active at one time. So is there anyway I can assign CPU cores to the terminal or my perl program? Or there is other reasons I don't figure out. Hope to get help. Thank you in advance. Rui |
![]() |
![]() |
![]() |
#2 |
Member
Location: Seattle, WA Join Date: Mar 2009
Posts: 87
|
![]()
perl cant be threaded so you would need to run a script to split the jobs into different instances of perl all running at the same time
|
![]() |
![]() |
![]() |
Thread Tools | |
|
|