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05-09-2011, 01:23 AM
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#1 |
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Junior Member
Location: China Join Date: Nov 2010
Posts: 4
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Reference sequence about Columbus for Velvet
I have a little confused about the input reference sequences for Columbus for velvet. So, if I want to do the break point assembly, how can I prepare the assisted reference sequences? For example, if the break points is at chr1:1234567, shall I prepare one fasta file spaning the break points (chr1:1234467-1234667) or two individual ones (chr1:1234467-1234567 and chr1:1234567-1234667)?
Can anyone help me on this? Thanks a lot! |
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06-01-2011, 06:10 AM
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#2 |
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Junior Member
Location: Asia Join Date: Dec 2009
Posts: 6
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You could try both templates...remember to concatenate the two parts...
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